Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDW69593.1 | SDW71139.1 | SAMN05421783_10790 | SAMN05421783_107146 | Hypothetical protein. | Sel1 repeat-containing protein. | 0.971 |
| SDW69593.1 | SDX15785.1 | SAMN05421783_10790 | SAMN05421783_11594 | Hypothetical protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.899 |
| SDW69593.1 | SDX22214.1 | SAMN05421783_10790 | SAMN05421783_117102 | Hypothetical protein. | ATP-dependent DNA helicase RecQ. | 0.723 |
| SDW69593.1 | SDX48096.1 | SAMN05421783_10790 | SAMN05421783_12923 | Hypothetical protein. | DNA repair exonuclease SbcCD nuclease subunit. | 0.988 |
| SDW69593.1 | polA | SAMN05421783_10790 | SAMN05421783_102109 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.993 |
| SDW69593.1 | recA | SAMN05421783_10790 | SAMN05421783_11780 | Hypothetical protein. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.987 |
| SDW69593.1 | topA | SAMN05421783_10790 | SAMN05421783_101154 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.991 |
| SDW71139.1 | SDW69593.1 | SAMN05421783_107146 | SAMN05421783_10790 | Sel1 repeat-containing protein. | Hypothetical protein. | 0.971 |
| SDW71139.1 | SDX15785.1 | SAMN05421783_107146 | SAMN05421783_11594 | Sel1 repeat-containing protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.886 |
| SDW71139.1 | SDX22214.1 | SAMN05421783_107146 | SAMN05421783_117102 | Sel1 repeat-containing protein. | ATP-dependent DNA helicase RecQ. | 0.994 |
| SDW71139.1 | SDX38161.1 | SAMN05421783_107146 | SAMN05421783_12346 | Sel1 repeat-containing protein. | ATP-dependent DNA helicase RecQ. | 0.971 |
| SDW71139.1 | SDX48096.1 | SAMN05421783_107146 | SAMN05421783_12923 | Sel1 repeat-containing protein. | DNA repair exonuclease SbcCD nuclease subunit. | 0.999 |
| SDW71139.1 | SDX50219.1 | SAMN05421783_107146 | SAMN05421783_13126 | Sel1 repeat-containing protein. | ATP-dependent DNA helicase RecQ. | 0.971 |
| SDW71139.1 | polA | SAMN05421783_107146 | SAMN05421783_102109 | Sel1 repeat-containing protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.987 |
| SDW71139.1 | recA | SAMN05421783_107146 | SAMN05421783_11780 | Sel1 repeat-containing protein. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.957 |
| SDW71139.1 | recX | SAMN05421783_107146 | SAMN05421783_11781 | Sel1 repeat-containing protein. | Regulatory protein; Modulates RecA activity; Belongs to the RecX family. | 0.441 |
| SDW71139.1 | topA | SAMN05421783_107146 | SAMN05421783_101154 | Sel1 repeat-containing protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.979 |
| SDX15785.1 | SDW69593.1 | SAMN05421783_11594 | SAMN05421783_10790 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Hypothetical protein. | 0.899 |
| SDX15785.1 | SDW71139.1 | SAMN05421783_11594 | SAMN05421783_107146 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Sel1 repeat-containing protein. | 0.886 |
| SDX15785.1 | SDX22214.1 | SAMN05421783_11594 | SAMN05421783_117102 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | ATP-dependent DNA helicase RecQ. | 0.994 |
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