STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX38190.1Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain. (1552 aa)    
Predicted Functional Partners:
SDX38208.1
AAA domain (dynein-related subfamily).
 
     0.804
SDX38232.1
Hypothetical protein.
       0.773
SDX38261.1
Hypothetical protein.
       0.773
SDX32350.1
Arylsulfatase.
 
   0.707
SDX32334.1
Hypothetical protein.
 
   0.653
SDW25829.1
Predicted ATPase.
 
 
  0.630
SDW44566.1
Dimethylhistidine N-methyltransferase.
  
 
 0.623
SDX32316.1
Arylsulfatase.
 
   0.605
SDX33951.1
Adenylate cyclase.
  
  
  0.526
SDW11226.1
Arylsulfatase.
 
   0.521
Your Current Organism:
Thiocapsa roseopersicina
NCBI taxonomy Id: 1058
Other names: DSM 217, T. roseopersicina, Thiocapsa floridana, Thiocapsa minima
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.