STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX46938.1Heme oxygenase. (235 aa)    
Predicted Functional Partners:
SDX05485.1
PAS fold.
 
   
 0.810
mtgA-2
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
       0.773
SDW77223.1
Hypothetical protein.
  
     0.638
SDX11294.1
Protein of unknown function.
  
     0.546
SDW77253.1
Zinc/manganese transport system substrate-binding protein.
  
     0.503
SDX33902.1
FecR family protein.
  
  
 0.498
SDX46959.1
Hypothetical protein.
       0.487
SDX32590.1
Esterase/lipase superfamily enzyme.
  
     0.445
SDX24083.1
Esterase/lipase superfamily enzyme.
  
     0.438
SDX14506.1
Outer membrane efflux protein.
  
     0.417
Your Current Organism:
Thiocapsa roseopersicina
NCBI taxonomy Id: 1058
Other names: DSM 217, T. roseopersicina, Thiocapsa floridana, Thiocapsa minima
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