STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX49101.1Transcriptional regulator. (249 aa)    
Predicted Functional Partners:
SDX14982.1
Glutamate synthase (NADH) large subunit.
    
 0.860
SDX09859.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.798
SDW67414.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.782
SDX67412.1
PAS domain-containing protein.
  
 0.730
SDW45752.1
HPt (histidine-containing phosphotransfer) domain-containing protein.
  
 0.708
SDW25829.1
Predicted ATPase.
  
 0.682
SDX33951.1
Adenylate cyclase.
   
 0.670
SDX34915.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.659
SDW02191.1
PAS domain S-box-containing protein.
   
 0.549
SDW48958.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.538
Your Current Organism:
Thiocapsa roseopersicina
NCBI taxonomy Id: 1058
Other names: DSM 217, T. roseopersicina, Thiocapsa floridana, Thiocapsa minima
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