STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX51034.1Radical SAM superfamily enzyme YgiQ, UPF0313 family. (513 aa)    
Predicted Functional Partners:
SDX05081.1
Divinyl protochlorophyllide a 8-vinyl-reductase.
  
 
 0.891
SDX05374.1
3-vinyl bacteriochlorophyllide hydratase.
   
 
 0.599
SDX05417.1
Chlorophyll synthase.
   
 
 0.599
cmoB
tRNA (mo5U34)-methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
  
 
 0.593
SDX28051.1
Hypothetical protein.
   
    0.570
SDX04868.1
Chlorophyllide a reductase subunit Z.
   
 
  0.567
SDX05264.1
Mg-protoporphyrin IX methyltransferase.
   
 
 0.543
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
     
 0.527
SDW56993.1
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
     
 0.512
SDX52591.1
Cytochrome c oxidase cbb3-type subunit 1.
  
    0.476
Your Current Organism:
Thiocapsa roseopersicina
NCBI taxonomy Id: 1058
Other names: DSM 217, T. roseopersicina, Thiocapsa floridana, Thiocapsa minima
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.