STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHS24_008293Alginate_lyase domain-containing protein. (448 aa)    
Predicted Functional Partners:
MPH1
3'-5' DNA helicase.
    
 0.978
EHS24_007179
Uncharacterized protein.
   
 0.627
EHS24_005963
Uncharacterized protein.
   
 0.627
RFA1
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
  0.535
RAD10
SsDNA endonuclease and repair protein rad10.
    
 0.526
NPL4
Nuclear protein localization protein 4.
    
  0.512
NTF2
Nuclear transport factor 2.
    
 0.504
EHS24_003385
Uncharacterized protein.
    
  0.492
EHS24_009233
Uncharacterized protein.
    
  0.492
EHS24_008180
Uncharacterized protein.
    
  0.492
Your Current Organism:
Apiotrichum porosum
NCBI taxonomy Id: 105984
Other names: A. porosum, CBS 2040, NRRL Y-17198, Trichosporon porosum, Trichosporon sp. ICMP 16990, Trichosporon sp. ICMP 16991, Trichosporon sp. SJ13S15, Trichosporon sp. SJ15S11, VKM Y-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.