STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PZF1_2Strongly-conserved Zn-finger binding protein (TFIIIA). (130 aa)    
Predicted Functional Partners:
TFC4
Transcription factor TFIIIC subunit tfc4.
    
 0.640
RPC82
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.609
EHS24_002392
Uncharacterized protein.
    
  0.607
RVB1
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
  0.607
EHS24_000799
Helicase ATP-binding domain-containing protein.
    
 0.607
EHS24_007150
Uncharacterized protein.
    
  0.602
MRPS9
37S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
    
  0.602
MRPS16
37S ribosomal protein S16, mitochondrial.
    
  0.601
MRP4
37S ribosomal protein, mitochondrial.
   
  0.601
EHS24_008615
Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.
   
  0.600
Your Current Organism:
Apiotrichum porosum
NCBI taxonomy Id: 105984
Other names: A. porosum, CBS 2040, NRRL Y-17198, Trichosporon porosum, Trichosporon sp. ICMP 16990, Trichosporon sp. ICMP 16991, Trichosporon sp. SJ13S15, Trichosporon sp. SJ15S11, VKM Y-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.