STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHS24_004845Uncharacterized protein. (296 aa)    
Predicted Functional Partners:
BRR2
DEIH-box ATPase.
    
   0.887
PRP8
Pre-mRNA-splicing factor 8.
    
 
 0.886
EHS24_000539
Nkap_C domain-containing protein.
   
 
  0.801
SLU7
mRNA splicing protein.
   
 
 0.788
EHS24_004958
Uncharacterized protein.
    
 
 0.750
EHS24_004147
Uncharacterized protein.
   
  
 0.745
EHS24_004801
Uncharacterized protein.
    
  0.740
CWC22
Pre-mRNA-splicing factor cwc22.
    
 0.731
MTR4
ATP-dependent RNA helicase mtr4.
    
  0.700
EHS24_007788
Uncharacterized protein.
  
  
  0.698
Your Current Organism:
Apiotrichum porosum
NCBI taxonomy Id: 105984
Other names: A. porosum, CBS 2040, NRRL Y-17198, Trichosporon porosum, Trichosporon sp. ICMP 16990, Trichosporon sp. ICMP 16991, Trichosporon sp. SJ13S15, Trichosporon sp. SJ15S11, VKM Y-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.