STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2DDZ2Small nuclear ribonucleoprotein Sm D3. (73 aa)    
Predicted Functional Partners:
A0A1Y2ENE1
Sm domain-containing protein.
   
 0.999
A0A1Y2EY04
Small nuclear ribonucleoprotein G.
   
 0.999
A0A1Y2FVI9
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.999
A0A1Y2FWD6
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.999
A0A1Y2FYV4
Small nuclear ribonucleo protein SmF.
   
 0.999
A0A1Y2G2H0
Small nuclear ribonucleoprotein Sm D2.
   
 0.999
A0A1Y2FTI0
Sm domain-containing protein.
   
 0.997
A0A1Y2G3A2
U2 small nuclear ribonucleo protein A.
   
 0.997
A0A1Y2FI28
PRP1_N domain-containing protein.
   
 0.996
A0A1Y2EHE8
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.995
Your Current Organism:
Leucosporidium creatinivorum
NCBI taxonomy Id: 106004
Other names: CBS 8620, L. creatinivorum, Leucosporidiella creatinivora, Leucosporidiella creatinivora (Golubev) J.P. Samp., 2003, Leucosporidium creatinivorum (Golubev) V. de Garcia, M. A. Coelho, T. Maia, L. H. Rosa, A. M. Vaz, C. A. Rosa, J. P. Sampaio, P. Goncalves, M. R. van Broock andD. Libkind, 2015, Rhodotorula creatinivora, Rhodotorula creatinovora, VKM Y-2838
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