STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABD09411.1CRISPR-associated helicase, Cas3 family. (962 aa)    
Predicted Functional Partners:
ABD09414.1
CRISPR-associated protein, Cse4 family.
 
 
 0.991
ABD09416.1
CRISPR-associated protein, Cse3 family.
 
 
 
 0.991
ABD09412.1
CRISPR-associated protein, Cse1 family.
 
 0.952
ABD09415.1
CRISPR-associated protein, Cas5e family.
 
 
 0.892
ABD09413.1
CRISPR-associated protein, Cse2 family.
 
  
 0.880
ABD09418.1
CRISPR-associated protein, Cas2 family.
 
  
 0.871
cas1
CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.861
ABD09421.1
Hypothetical protein.
 
     0.651
ABD09409.1
Glycosyl transferase, family 2.
       0.419
ABD09410.1
Acyltransferase 3.
       0.419
Your Current Organism:
Frankia casuarinae
NCBI taxonomy Id: 106370
Other names: CECT 9043, DSM 45818, F. casuarinae, Frankia casuarinae Nouioui et al. 2016, Frankia sp. BR, Frankia sp. CcI3, Frankia sp. Cg70.9, Frankia sp. Thr, strain CcI3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.