Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABD09566.1 | ABD09755.1 | Francci3_0174 | Francci3_0368 | Serine phosphatase. | Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor. | 0.609 |
ABD09566.1 | ABD09827.1 | Francci3_0174 | Francci3_0441 | Serine phosphatase. | Anti-sigma-factor antagonist (STAS) domain protein. | 0.687 |
ABD09566.1 | ABD10162.1 | Francci3_0174 | Francci3_0778 | Serine phosphatase. | Putative PAS/PAC sensor protein. | 0.727 |
ABD09566.1 | ABD10555.1 | Francci3_0174 | Francci3_1176 | Serine phosphatase. | Stage II sporulation E. | 0.789 |
ABD09566.1 | ABD11363.1 | Francci3_0174 | Francci3_1989 | Serine phosphatase. | Putative PAS/PAC sensor protein. | 0.779 |
ABD09566.1 | ABD11510.1 | Francci3_0174 | Francci3_2138 | Serine phosphatase. | Putative serine/threonine kinase anti-sigma factor. | 0.610 |
ABD09566.1 | ABD13400.1 | Francci3_0174 | Francci3_4050 | Serine phosphatase. | Serine phosphatase. | 0.842 |
ABD09566.1 | ABD13648.1 | Francci3_0174 | Francci3_4302 | Serine phosphatase. | Anti-sigma-factor antagonist (STAS) domain protein. | 0.857 |
ABD09566.1 | ABD13649.1 | Francci3_0174 | Francci3_4303 | Serine phosphatase. | Putative serine/threonine kinase anti-sigma factor. | 0.558 |
ABD09566.1 | ABD13761.1 | Francci3_0174 | Francci3_4415 | Serine phosphatase. | Putative serine/threonine kinase anti-sigma factor. | 0.512 |
ABD09755.1 | ABD09566.1 | Francci3_0368 | Francci3_0174 | Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor. | Serine phosphatase. | 0.609 |
ABD09755.1 | ABD09827.1 | Francci3_0368 | Francci3_0441 | Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor. | Anti-sigma-factor antagonist (STAS) domain protein. | 0.721 |
ABD09755.1 | ABD10162.1 | Francci3_0368 | Francci3_0778 | Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor. | Putative PAS/PAC sensor protein. | 0.999 |
ABD09755.1 | ABD10555.1 | Francci3_0368 | Francci3_1176 | Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor. | Stage II sporulation E. | 0.913 |
ABD09755.1 | ABD11363.1 | Francci3_0368 | Francci3_1989 | Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor. | Putative PAS/PAC sensor protein. | 0.949 |
ABD09755.1 | ABD11510.1 | Francci3_0368 | Francci3_2138 | Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor. | Putative serine/threonine kinase anti-sigma factor. | 0.576 |
ABD09755.1 | ABD13400.1 | Francci3_0368 | Francci3_4050 | Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor. | Serine phosphatase. | 0.982 |
ABD09755.1 | ABD13648.1 | Francci3_0368 | Francci3_4302 | Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor. | Anti-sigma-factor antagonist (STAS) domain protein. | 0.659 |
ABD09755.1 | ABD13649.1 | Francci3_0368 | Francci3_4303 | Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor. | Putative serine/threonine kinase anti-sigma factor. | 0.576 |
ABD09755.1 | ABD13761.1 | Francci3_0368 | Francci3_4415 | Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor. | Putative serine/threonine kinase anti-sigma factor. | 0.576 |
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