STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABD11314.1Conserved hypothetical protein. (539 aa)    
Predicted Functional Partners:
ABD11316.1
NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
  
 0.971
ABD11315.1
Peptidase M52, hydrogen uptake protein.
 
     0.950
ABD11317.1
Hydrogen:quinone oxidoreductase.
 
 
 0.946
ABD11318.1
Nitrogen-fixing NifU-like.
 
     0.902
ABD11319.1
Conserved hypothetical protein.
 
     0.902
hypA-2
Hydrogenase expression/synthesis, HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.617
ABD11313.1
Hydrogenase accessory protein HypB.
     
 0.516
ABD11401.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.495
ABD12146.1
Hypothetical protein.
  
     0.410
Your Current Organism:
Frankia casuarinae
NCBI taxonomy Id: 106370
Other names: CECT 9043, DSM 45818, F. casuarinae, Frankia casuarinae Nouioui et al. 2016, Frankia sp. BR, Frankia sp. CcI3, Frankia sp. Cg70.9, Frankia sp. Thr, strain CcI3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.