STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABD11536.1Citrate lyase; Belongs to the HpcH/HpaI aldolase family. (338 aa)    
Predicted Functional Partners:
ABD12283.1
HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 
0.929
ABD12162.1
Citrate lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 
0.925
ABD11538.1
MaoC-like dehydratase.
 
  
 0.632
ABD11539.1
methylmalonyl-CoA mutase.
 
  
 0.620
ABD11537.1
Butyryl-CoA dehydrogenase.
  
    0.530
ABD11535.1
AMP-dependent synthetase and ligase.
 
     0.497
Your Current Organism:
Frankia casuarinae
NCBI taxonomy Id: 106370
Other names: CECT 9043, DSM 45818, F. casuarinae, Frankia casuarinae Nouioui et al. 2016, Frankia sp. BR, Frankia sp. CcI3, Frankia sp. Cg70.9, Frankia sp. Thr, strain CcI3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.