STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABD12438.1Transcriptional regulator, XRE family. (81 aa)    
Predicted Functional Partners:
ABD12439.1
Aminotransferase, class IV.
 
     0.816
ABD11432.1
Conserved hypothetical protein.
  
     0.600
ABD13619.1
Putative plasmid replication initiator protein.
  
     0.573
ABD10819.1
Conserved hypothetical protein.
   
 
 0.571
ABD12041.1
Plasmid stabilization system.
   
 
 0.571
ABD12421.1
Conserved hypothetical protein.
   
 
 0.571
ABD11478.1
Putative replication initiation protein.
  
     0.540
ABD13474.1
Putative replication initiation protein.
  
     0.535
ABD13510.1
Putative replication initiation protein.
  
     0.535
ABD12753.1
Putative replication initiation protein.
  
     0.531
Your Current Organism:
Frankia casuarinae
NCBI taxonomy Id: 106370
Other names: CECT 9043, DSM 45818, F. casuarinae, Frankia casuarinae Nouioui et al. 2016, Frankia sp. BR, Frankia sp. CcI3, Frankia sp. Cg70.9, Frankia sp. Thr, strain CcI3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.