Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABD09821.1 | ABD10735.1 | Francci3_0434 | Francci3_1358 | 3-dehydroquinate synthase. | Anthranilate synthase component I and chorismate binding protein. | 0.485 |
| ABD09821.1 | ABD11831.1 | Francci3_0434 | Francci3_2464 | 3-dehydroquinate synthase. | Chorismate mutase. | 0.524 |
| ABD09821.1 | ABD12568.1 | Francci3_0434 | Francci3_3211 | 3-dehydroquinate synthase. | Shikimate dehydrogenase. | 0.987 |
| ABD09821.1 | aroA | Francci3_0434 | Francci3_3771 | 3-dehydroquinate synthase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.984 |
| ABD09821.1 | aroC | Francci3_0434 | Francci3_3209 | 3-dehydroquinate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.956 |
| ABD09821.1 | aroK | Francci3_0434 | Francci3_3208 | 3-dehydroquinate synthase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.995 |
| ABD09821.1 | trpE | Francci3_0434 | Francci3_3020 | 3-dehydroquinate synthase. | Anthranilate synthase, component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concent [...] | 0.548 |
| ABD10735.1 | ABD09821.1 | Francci3_1358 | Francci3_0434 | Anthranilate synthase component I and chorismate binding protein. | 3-dehydroquinate synthase. | 0.485 |
| ABD10735.1 | ABD11831.1 | Francci3_1358 | Francci3_2464 | Anthranilate synthase component I and chorismate binding protein. | Chorismate mutase. | 0.810 |
| ABD10735.1 | ABD12568.1 | Francci3_1358 | Francci3_3211 | Anthranilate synthase component I and chorismate binding protein. | Shikimate dehydrogenase. | 0.543 |
| ABD10735.1 | ABD13165.1 | Francci3_1358 | Francci3_3815 | Anthranilate synthase component I and chorismate binding protein. | Conserved hypothetical protein. | 0.834 |
| ABD10735.1 | aroA | Francci3_1358 | Francci3_3771 | Anthranilate synthase component I and chorismate binding protein. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.487 |
| ABD10735.1 | aroB | Francci3_1358 | Francci3_3207 | Anthranilate synthase component I and chorismate binding protein. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.522 |
| ABD10735.1 | aroC | Francci3_1358 | Francci3_3209 | Anthranilate synthase component I and chorismate binding protein. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.925 |
| ABD10735.1 | aroK | Francci3_1358 | Francci3_3208 | Anthranilate synthase component I and chorismate binding protein. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.564 |
| ABD10735.1 | trpE | Francci3_1358 | Francci3_3020 | Anthranilate synthase component I and chorismate binding protein. | Anthranilate synthase, component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concent [...] | 0.852 |
| ABD11401.1 | ABD12568.1 | Francci3_2027 | Francci3_3211 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | Shikimate dehydrogenase. | 0.440 |
| ABD11401.1 | aroC | Francci3_2027 | Francci3_3209 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.959 |
| ABD11831.1 | ABD09821.1 | Francci3_2464 | Francci3_0434 | Chorismate mutase. | 3-dehydroquinate synthase. | 0.524 |
| ABD11831.1 | ABD10735.1 | Francci3_2464 | Francci3_1358 | Chorismate mutase. | Anthranilate synthase component I and chorismate binding protein. | 0.810 |
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