STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABD13288.1Methyltransferase type 12. (444 aa)    
Predicted Functional Partners:
ABD13291.1
NAD-dependent epimerase/dehydratase.
     0.926
ABD10940.1
NAD-dependent epimerase/dehydratase.
     0.919
ABD13300.1
LmbE-like protein.
 
     0.791
ABD13281.1
Conserved hypothetical protein.
 
 
   0.762
ABD10943.1
Glycosyl transferase, family 2.
 
     0.733
ABD10939.1
Nucleotidyl transferase.
 
    0.691
ABD13289.1
Hypothetical protein.
       0.668
ABD13280.1
Nucleotidyl transferase.
 
    0.653
ABD13287.1
Membrane protein.
 
     0.617
ABD13283.1
Conserved hypothetical protein.
 
     0.539
Your Current Organism:
Frankia casuarinae
NCBI taxonomy Id: 106370
Other names: CECT 9043, DSM 45818, F. casuarinae, Frankia casuarinae Nouioui et al. 2016, Frankia sp. BR, Frankia sp. CcI3, Frankia sp. Cg70.9, Frankia sp. Thr, strain CcI3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.