STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABD13543.1Hypothetical protein. (374 aa)    
Predicted Functional Partners:
ABD13546.1
Protein of unknown function DUF181.
  
  
 0.879
ABD13544.1
Hypothetical protein.
  
    0.834
ABD13545.1
Hypothetical protein.
       0.824
ABD13547.1
Hypothetical protein.
       0.824
ABD13548.1
Hypothetical protein.
  
    0.773
ABD13549.1
ABC transporter related.
  
    0.753
ABD13542.1
Methyltransferase type 12.
  
    0.646
ABD13550.1
ABC-2.
       0.606
ABD10494.1
Polyketide synthase-like.
  
 
 0.529
Your Current Organism:
Frankia casuarinae
NCBI taxonomy Id: 106370
Other names: CECT 9043, DSM 45818, F. casuarinae, Frankia casuarinae Nouioui et al. 2016, Frankia sp. BR, Frankia sp. CcI3, Frankia sp. Cg70.9, Frankia sp. Thr, strain CcI3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.