STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABD13554.13-dehydroquinate synthase II. (373 aa)    
Predicted Functional Partners:
ABD13553.1
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase.
 
 
 0.996
ABD11443.1
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase.
 
 
 0.986
ABD11442.1
3-dehydroquinate synthase II.
  
  
 
0.902
ABD13552.1
AMP-dependent synthetase and ligase.
       0.773
ABD13555.1
Salicylate 1-monooxygenase.
       0.701
ABD11450.1
Hypothetical protein.
  
     0.589
ABD13165.1
Conserved hypothetical protein.
  
    0.548
ABD13095.1
UvrD/REP helicase.
  
     0.516
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
     
  0.499
ABD12441.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; Belongs to the class-II DAHP synthase family.
     
  0.499
Your Current Organism:
Frankia casuarinae
NCBI taxonomy Id: 106370
Other names: CECT 9043, DSM 45818, F. casuarinae, Frankia casuarinae Nouioui et al. 2016, Frankia sp. BR, Frankia sp. CcI3, Frankia sp. Cg70.9, Frankia sp. Thr, strain CcI3
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