STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1H46_038187Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (464 aa)    
Predicted Functional Partners:
C1H46_045117
ARID domain-containing protein.
   
 0.943
C1H46_033633
Uncharacterized protein.
   
 0.943
C1H46_027870
Uncharacterized protein.
   
 0.943
C1H46_027145
Uncharacterized protein.
   
 0.943
C1H46_010852
Uncharacterized protein.
   
 0.943
C1H46_009786
Uncharacterized protein.
   
 0.943
C1H46_006845
HMG box domain-containing protein.
   
 0.943
C1H46_000325
ARID domain-containing protein.
   
 0.943
C1H46_039314
Uncharacterized protein.
    
 0.942
C1H46_011658
Uncharacterized protein.
    
 0.942
Your Current Organism:
Malus baccata
NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.