C1H46_032559 protein (Malus baccata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C1H46_032559

Uncharacterized protein. (248 aa)

Predicted Functional Partners:

C1H46_017477

0.527

C1H46_007696

0.527

C1H46_014062

0.519

C1H46_042753

0.512

C1H46_039618

0.511

C1H46_011436

0.510

C1H46_040503

0.506

C1H46_025518

0.503

C1H46_001614

0.502

C1H46_002076

0.502

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_001614	C1H46_007696	A0A540NNZ6	A0A540N804	Uncharacterized protein.	F-box domain-containing protein.	0.586
C1H46_001614	C1H46_017477	A0A540NNZ6	A0A540MDV8	Uncharacterized protein.	Tify domain-containing protein.	0.586
C1H46_001614	C1H46_032559	A0A540NNZ6	A0A540L5Z7	Uncharacterized protein.	Uncharacterized protein.	0.502
C1H46_001614	C1H46_040503	A0A540NNZ6	A0A540KID5	Uncharacterized protein.	FPG_CAT domain-containing protein.	0.533
C1H46_002076	C1H46_007696	A0A540NP92	A0A540N804	Uncharacterized protein.	F-box domain-containing protein.	0.586
C1H46_002076	C1H46_017477	A0A540NP92	A0A540MDV8	Uncharacterized protein.	Tify domain-containing protein.	0.586
C1H46_002076	C1H46_032559	A0A540NP92	A0A540L5Z7	Uncharacterized protein.	Uncharacterized protein.	0.502
C1H46_002076	C1H46_040503	A0A540NP92	A0A540KID5	Uncharacterized protein.	FPG_CAT domain-containing protein.	0.533
C1H46_007696	C1H46_001614	A0A540N804	A0A540NNZ6	F-box domain-containing protein.	Uncharacterized protein.	0.586
C1H46_007696	C1H46_002076	A0A540N804	A0A540NP92	F-box domain-containing protein.	Uncharacterized protein.	0.586
C1H46_007696	C1H46_032559	A0A540N804	A0A540L5Z7	F-box domain-containing protein.	Uncharacterized protein.	0.527
C1H46_007696	C1H46_040503	A0A540N804	A0A540KID5	F-box domain-containing protein.	FPG_CAT domain-containing protein.	0.565
C1H46_011436	C1H46_025518	A0A540MW22	A0A540LR12	Uncharacterized protein.	Uncharacterized protein.	0.475
C1H46_011436	C1H46_032559	A0A540MW22	A0A540L5Z7	Uncharacterized protein.	Uncharacterized protein.	0.510
C1H46_011436	C1H46_039618	A0A540MW22	A0A540KKV7	Uncharacterized protein.	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	0.409
C1H46_011436	C1H46_042753	A0A540MW22	A0A540KBW9	Uncharacterized protein.	OVATE domain-containing protein.	0.526
C1H46_014062	C1H46_032559	A0A540MNJ7	A0A540L5Z7	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family.	Uncharacterized protein.	0.519
C1H46_017477	C1H46_001614	A0A540MDV8	A0A540NNZ6	Tify domain-containing protein.	Uncharacterized protein.	0.586
C1H46_017477	C1H46_002076	A0A540MDV8	A0A540NP92	Tify domain-containing protein.	Uncharacterized protein.	0.586
C1H46_017477	C1H46_032559	A0A540MDV8	A0A540L5Z7	Tify domain-containing protein.	Uncharacterized protein.	0.527