STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1H46_029985CAF1C_H4-bd domain-containing protein. (173 aa)    
Predicted Functional Partners:
C1H46_034313
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 
 0.893
C1H46_032405
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 
 0.893
C1H46_005749
Uncharacterized protein.
   
 
 0.891
C1H46_020895
Brix domain-containing protein.
   
  
 0.885
C1H46_000717
WD_REPEATS_REGION domain-containing protein.
   
  
 0.885
C1H46_018338
RRM domain-containing protein.
   
  
 0.869
C1H46_006512
WD_REPEATS_REGION domain-containing protein.
   
  
 0.865
C1H46_019930
WD_REPEATS_REGION domain-containing protein.
   
 
 0.858
C1H46_005827
WD_REPEATS_REGION domain-containing protein.
   
 
 0.858
C1H46_029563
Uncharacterized protein.
   
    0.850
Your Current Organism:
Malus baccata
NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi
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