C1H46_018223 protein (Malus baccata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C1H46_018223

Uncharacterized protein. (334 aa)

Predicted Functional Partners:

C1H46_038236

0.766

C1H46_021072

0.766

C1H46_002779

0.734

C1H46_008154

0.588

C1H46_040512

0.544

C1H46_036757

0.515

C1H46_022861

0.515

C1H46_021422

0.481

C1H46_012192

0.481

C1H46_043105

0.472

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_002779	C1H46_018223	A0A540NKK9	A0A540MBU0	Uncharacterized protein.	Uncharacterized protein.	0.734
C1H46_002779	C1H46_043105	A0A540NKK9	A0A540KAW9	Uncharacterized protein.	Uncharacterized protein.	0.734
C1H46_008154	C1H46_018223	A0A540N5A3	A0A540MBU0	GHMP_kinases_N domain-containing protein.	Uncharacterized protein.	0.588
C1H46_008154	C1H46_043105	A0A540N5A3	A0A540KAW9	GHMP_kinases_N domain-containing protein.	Uncharacterized protein.	0.588
C1H46_012192	C1H46_018223	A0A540MTV2	A0A540MBU0	Uncharacterized protein.	Uncharacterized protein.	0.481
C1H46_012192	C1H46_021072	A0A540MTV2	A0A540M3J5	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.968
C1H46_012192	C1H46_021422	A0A540MTV2	A0A540M363	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.594
C1H46_012192	C1H46_038236	A0A540MTV2	A0A540KPX9	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.968
C1H46_012192	C1H46_040512	A0A540MTV2	A0A540KIU4	Uncharacterized protein.	DUF667 domain-containing protein.	0.892
C1H46_012192	C1H46_043105	A0A540MTV2	A0A540KAW9	Uncharacterized protein.	Uncharacterized protein.	0.467
C1H46_018223	C1H46_002779	A0A540MBU0	A0A540NKK9	Uncharacterized protein.	Uncharacterized protein.	0.734
C1H46_018223	C1H46_008154	A0A540MBU0	A0A540N5A3	Uncharacterized protein.	GHMP_kinases_N domain-containing protein.	0.588
C1H46_018223	C1H46_012192	A0A540MBU0	A0A540MTV2	Uncharacterized protein.	Uncharacterized protein.	0.481
C1H46_018223	C1H46_021072	A0A540MBU0	A0A540M3J5	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.766
C1H46_018223	C1H46_021422	A0A540MBU0	A0A540M363	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.481
C1H46_018223	C1H46_022861	A0A540MBU0	A0A540LYT2	Uncharacterized protein.	Ribosomal protein L37; Binds to the 23S rRNA.	0.515
C1H46_018223	C1H46_036757	A0A540MBU0	A0A540KU01	Uncharacterized protein.	Uncharacterized protein.	0.515
C1H46_018223	C1H46_038236	A0A540MBU0	A0A540KPX9	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.766
C1H46_018223	C1H46_040512	A0A540MBU0	A0A540KIU4	Uncharacterized protein.	DUF667 domain-containing protein.	0.544
C1H46_018223	C1H46_043105	A0A540MBU0	A0A540KAW9	Uncharacterized protein.	Uncharacterized protein.	0.472