C1H46_016019 protein (Malus baccata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C1H46_016019

Gb3_synth domain-containing protein. (679 aa)

Predicted Functional Partners:

C1H46_036910

0.795

C1H46_033193

0.795

C1H46_026132

0.768

C1H46_033403

0.766

C1H46_033401

0.765

C1H46_026645

0.761

C1H46_014690

0.478

C1H46_041589

0.477

C1H46_045595

0.473

C1H46_023812

0.473

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_014690	C1H46_016019	A0A540MLI7	A0A540MI21	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.	Gb3_synth domain-containing protein.	0.478
C1H46_014690	C1H46_023812	A0A540MLI7	A0A540LVX7	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.	Glyco_tran_28_C domain-containing protein.	0.532
C1H46_014690	C1H46_041589	A0A540MLI7	A0A540KF72	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.	DYW_deaminase domain-containing protein.	0.463
C1H46_014690	C1H46_045595	A0A540MLI7	A0A540K4R8	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.	Uncharacterized protein.	0.532
C1H46_016019	C1H46_014690	A0A540MI21	A0A540MLI7	Gb3_synth domain-containing protein.	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.	0.478
C1H46_016019	C1H46_023812	A0A540MI21	A0A540LVX7	Gb3_synth domain-containing protein.	Glyco_tran_28_C domain-containing protein.	0.473
C1H46_016019	C1H46_026132	A0A540MI21	A0A540LP28	Gb3_synth domain-containing protein.	Gb3_synth domain-containing protein.	0.768
C1H46_016019	C1H46_026645	A0A540MI21	A0A540LMU6	Gb3_synth domain-containing protein.	Gb3_synth domain-containing protein.	0.761
C1H46_016019	C1H46_033193	A0A540MI21	A0A540L453	Gb3_synth domain-containing protein.	Glyco_hydro_2_N domain-containing protein.	0.795
C1H46_016019	C1H46_033401	A0A540MI21	A0A540L3K4	Gb3_synth domain-containing protein.	Gb3_synth domain-containing protein.	0.765
C1H46_016019	C1H46_033403	A0A540MI21	A0A540L3J2	Gb3_synth domain-containing protein.	Gb3_synth domain-containing protein.	0.766
C1H46_016019	C1H46_036910	A0A540MI21	A0A540KTK8	Gb3_synth domain-containing protein.	Bgal_small_N domain-containing protein.	0.795
C1H46_016019	C1H46_041589	A0A540MI21	A0A540KF72	Gb3_synth domain-containing protein.	DYW_deaminase domain-containing protein.	0.477
C1H46_016019	C1H46_045595	A0A540MI21	A0A540K4R8	Gb3_synth domain-containing protein.	Uncharacterized protein.	0.473
C1H46_023812	C1H46_014690	A0A540LVX7	A0A540MLI7	Glyco_tran_28_C domain-containing protein.	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.	0.532
C1H46_023812	C1H46_016019	A0A540LVX7	A0A540MI21	Glyco_tran_28_C domain-containing protein.	Gb3_synth domain-containing protein.	0.473
C1H46_023812	C1H46_041589	A0A540LVX7	A0A540KF72	Glyco_tran_28_C domain-containing protein.	DYW_deaminase domain-containing protein.	0.477
C1H46_026132	C1H46_016019	A0A540LP28	A0A540MI21	Gb3_synth domain-containing protein.	Gb3_synth domain-containing protein.	0.768
C1H46_026132	C1H46_026645	A0A540LP28	A0A540LMU6	Gb3_synth domain-containing protein.	Gb3_synth domain-containing protein.	0.929
C1H46_026132	C1H46_033193	A0A540LP28	A0A540L453	Gb3_synth domain-containing protein.	Glyco_hydro_2_N domain-containing protein.	0.933