C1H46_012874 protein (Malus baccata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C1H46_012874

Uncharacterized protein. (327 aa)

Predicted Functional Partners:

C1H46_045092

0.994

C1H46_019979

0.990

C1H46_010703

0.990

C1H46_015776

0.985

C1H46_015367

0.985

C1H46_009378

0.985

C1H46_008569

0.985

C1H46_035656

0.880

C1H46_022817

0.880

C1H46_008776

0.880

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_008569	C1H46_008776	A0A540N4A3	A0A540N523	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Structural maintenance of chromosomes protein.	0.970
C1H46_008569	C1H46_010703	A0A540N4A3	A0A540MY78	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Cnd3 domain-containing protein.	0.997
C1H46_008569	C1H46_012874	A0A540N4A3	A0A540MRW4	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Uncharacterized protein.	0.985
C1H46_008569	C1H46_015367	A0A540N4A3	A0A540MJP3	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Structural maintenance of chromosomes protein.	0.998
C1H46_008569	C1H46_015776	A0A540N4A3	A0A540MIB2	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Structural maintenance of chromosomes protein.	0.998
C1H46_008569	C1H46_019979	A0A540N4A3	A0A540M6X0	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Cnd3 domain-containing protein.	0.997
C1H46_008569	C1H46_022817	A0A540N4A3	A0A540LYR6	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	AAA_23 domain-containing protein.	0.969
C1H46_008569	C1H46_035656	A0A540N4A3	A0A540KXH6	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Structural maintenance of chromosomes protein.	0.970
C1H46_008569	C1H46_045092	A0A540N4A3	A0A540K570	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	SMC_N domain-containing protein.	0.999
C1H46_008776	C1H46_008569	A0A540N523	A0A540N4A3	Structural maintenance of chromosomes protein.	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	0.970
C1H46_008776	C1H46_009378	A0A540N523	A0A540N1T1	Structural maintenance of chromosomes protein.	Cnd1_N domain-containing protein.	0.970
C1H46_008776	C1H46_010703	A0A540N523	A0A540MY78	Structural maintenance of chromosomes protein.	Cnd3 domain-containing protein.	0.967
C1H46_008776	C1H46_012874	A0A540N523	A0A540MRW4	Structural maintenance of chromosomes protein.	Uncharacterized protein.	0.880
C1H46_008776	C1H46_015367	A0A540N523	A0A540MJP3	Structural maintenance of chromosomes protein.	Structural maintenance of chromosomes protein.	0.924
C1H46_008776	C1H46_015776	A0A540N523	A0A540MIB2	Structural maintenance of chromosomes protein.	Structural maintenance of chromosomes protein.	0.924
C1H46_008776	C1H46_019979	A0A540N523	A0A540M6X0	Structural maintenance of chromosomes protein.	Cnd3 domain-containing protein.	0.967
C1H46_008776	C1H46_022817	A0A540N523	A0A540LYR6	Structural maintenance of chromosomes protein.	AAA_23 domain-containing protein.	0.907
C1H46_008776	C1H46_045092	A0A540N523	A0A540K570	Structural maintenance of chromosomes protein.	SMC_N domain-containing protein.	0.805
C1H46_009378	C1H46_008776	A0A540N1T1	A0A540N523	Cnd1_N domain-containing protein.	Structural maintenance of chromosomes protein.	0.970
C1H46_009378	C1H46_010703	A0A540N1T1	A0A540MY78	Cnd1_N domain-containing protein.	Cnd3 domain-containing protein.	0.997