C1H46_012322 protein (Malus baccata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C1H46_012322

Uncharacterized protein. (729 aa)

Predicted Functional Partners:

C1H46_020895

0.995

C1H46_018338

0.995

C1H46_041075

0.992

C1H46_005611

0.992

C1H46_034313

0.991

C1H46_032405

0.991

C1H46_005680

0.991

C1H46_004685

0.991

C1H46_042609

0.990

C1H46_038206

0.989

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_004685	C1H46_005611	A0A540NFD0	A0A540NDT3	CBF domain-containing protein.	Uncharacterized protein.	0.956
C1H46_004685	C1H46_012322	A0A540NFD0	A0A540MUU7	CBF domain-containing protein.	Uncharacterized protein.	0.991
C1H46_004685	C1H46_018338	A0A540NFD0	A0A540MB91	CBF domain-containing protein.	RRM domain-containing protein.	0.991
C1H46_004685	C1H46_020895	A0A540NFD0	A0A540M3Z7	CBF domain-containing protein.	Brix domain-containing protein.	0.997
C1H46_004685	C1H46_032405	A0A540NFD0	A0A540L6F6	CBF domain-containing protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.975
C1H46_004685	C1H46_034313	A0A540NFD0	A0A540L0T7	CBF domain-containing protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.975
C1H46_004685	C1H46_038206	A0A540NFD0	A0A540KPV6	CBF domain-containing protein.	Uncharacterized protein.	0.973
C1H46_004685	C1H46_041075	A0A540NFD0	A0A540KGN2	CBF domain-containing protein.	Uncharacterized protein.	0.956
C1H46_004685	C1H46_042609	A0A540NFD0	A0A540KCJ5	CBF domain-containing protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.941
C1H46_005611	C1H46_004685	A0A540NDT3	A0A540NFD0	Uncharacterized protein.	CBF domain-containing protein.	0.956
C1H46_005611	C1H46_005680	A0A540NDT3	A0A540NCC8	Uncharacterized protein.	CBF domain-containing protein.	0.956
C1H46_005611	C1H46_012322	A0A540NDT3	A0A540MUU7	Uncharacterized protein.	Uncharacterized protein.	0.992
C1H46_005611	C1H46_018338	A0A540NDT3	A0A540MB91	Uncharacterized protein.	RRM domain-containing protein.	0.997
C1H46_005611	C1H46_020895	A0A540NDT3	A0A540M3Z7	Uncharacterized protein.	Brix domain-containing protein.	0.998
C1H46_005611	C1H46_032405	A0A540NDT3	A0A540L6F6	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.994
C1H46_005611	C1H46_034313	A0A540NDT3	A0A540L0T7	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.994
C1H46_005611	C1H46_038206	A0A540NDT3	A0A540KPV6	Uncharacterized protein.	Uncharacterized protein.	0.991
C1H46_005611	C1H46_042609	A0A540NDT3	A0A540KCJ5	Uncharacterized protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.997
C1H46_005680	C1H46_005611	A0A540NCC8	A0A540NDT3	CBF domain-containing protein.	Uncharacterized protein.	0.956
C1H46_005680	C1H46_012322	A0A540NCC8	A0A540MUU7	CBF domain-containing protein.	Uncharacterized protein.	0.991