C1H46_010220 protein (Malus baccata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C1H46_010220

AvrRpt-cleavage domain-containing protein. (115 aa)

Predicted Functional Partners:

C1H46_019300

0.539

C1H46_029021

0.537

C1H46_016550

0.537

C1H46_009178

0.537

C1H46_008371

0.537

C1H46_036998

0.535

C1H46_012387

0.534

C1H46_037892

0.533

C1H46_037893

0.533

C1H46_024948

0.533

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_008371	C1H46_009178	A0A540N4U1	A0A540N2F5	Uncharacterized protein.	Uncharacterized protein.	0.539
C1H46_008371	C1H46_010220	A0A540N4U1	A0A540MZL8	Uncharacterized protein.	AvrRpt-cleavage domain-containing protein.	0.537
C1H46_008371	C1H46_012387	A0A540N4U1	A0A540MTG2	Uncharacterized protein.	Uncharacterized protein.	0.528
C1H46_008371	C1H46_016550	A0A540N4U1	A0A540MGH4	Uncharacterized protein.	Uncharacterized protein.	0.541
C1H46_008371	C1H46_019300	A0A540N4U1	A0A540M8L2	Uncharacterized protein.	Uncharacterized protein.	0.533
C1H46_008371	C1H46_024948	A0A540N4U1	A0A540LT88	Uncharacterized protein.	Uncharacterized protein.	0.535
C1H46_008371	C1H46_029021	A0A540N4U1	A0A540LG51	Uncharacterized protein.	Uncharacterized protein.	0.538
C1H46_008371	C1H46_036998	A0A540N4U1	A0A540KTC3	Uncharacterized protein.	Uncharacterized protein.	0.539
C1H46_008371	C1H46_037892	A0A540N4U1	A0A540KQW3	Uncharacterized protein.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.537
C1H46_008371	C1H46_037893	A0A540N4U1	A0A540KR25	Uncharacterized protein.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.537
C1H46_009178	C1H46_008371	A0A540N2F5	A0A540N4U1	Uncharacterized protein.	Uncharacterized protein.	0.539
C1H46_009178	C1H46_010220	A0A540N2F5	A0A540MZL8	Uncharacterized protein.	AvrRpt-cleavage domain-containing protein.	0.537
C1H46_009178	C1H46_012387	A0A540N2F5	A0A540MTG2	Uncharacterized protein.	Uncharacterized protein.	0.529
C1H46_009178	C1H46_016550	A0A540N2F5	A0A540MGH4	Uncharacterized protein.	Uncharacterized protein.	0.539
C1H46_009178	C1H46_019300	A0A540N2F5	A0A540M8L2	Uncharacterized protein.	Uncharacterized protein.	0.530
C1H46_009178	C1H46_024948	A0A540N2F5	A0A540LT88	Uncharacterized protein.	Uncharacterized protein.	0.526
C1H46_009178	C1H46_029021	A0A540N2F5	A0A540LG51	Uncharacterized protein.	Uncharacterized protein.	0.543
C1H46_009178	C1H46_037892	A0A540N2F5	A0A540KQW3	Uncharacterized protein.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.531
C1H46_009178	C1H46_037893	A0A540N2F5	A0A540KR25	Uncharacterized protein.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.531
C1H46_010220	C1H46_008371	A0A540MZL8	A0A540N4U1	AvrRpt-cleavage domain-containing protein.	Uncharacterized protein.	0.537