STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1H46_008145HTH La-type RNA-binding domain-containing protein. (919 aa)    
Predicted Functional Partners:
C1H46_034814
Uncharacterized protein.
   
 
 0.559
C1H46_002859
Uncharacterized protein.
   
 
 0.559
C1H46_045243
Uncharacterized protein.
   
 
 0.519
C1H46_016212
MI domain-containing protein.
   
 
 0.519
C1H46_036911
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.439
C1H46_033194
RPOLA_N domain-containing protein.
   
 
 0.439
C1H46_014562
HD domain-containing protein.
      
 0.434
C1H46_045172
Nrap_D5 domain-containing protein.
   
    0.422
C1H46_023632
Uncharacterized protein.
   
    0.422
C1H46_045649
MI domain-containing protein.
   
 
 0.417
Your Current Organism:
Malus baccata
NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi
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