STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1H46_004165Uncharacterized protein. (143 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 0.999
rps11
30S ribosomal protein S11, chloroplastic; Belongs to the universal ribosomal protein uS11 family.
 
 0.999
C1H46_044738
S5 DRBM domain-containing protein.
  
 0.999
C1H46_039199
Uncharacterized protein.
  
 0.999
C1H46_029299
Uncharacterized protein.
  
 0.999
C1H46_029233
Uncharacterized protein.
  
 0.999
C1H46_024191
Uncharacterized protein.
  
 0.999
C1H46_009655
Uncharacterized protein.
  
 0.999
C1H46_028321
Uncharacterized protein.
  
 0.998
C1H46_022759
Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.
   
 0.998
Your Current Organism:
Malus baccata
NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi
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