STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mterf3Mitochondrial transcription termination factor 3. (428 aa)    
Predicted Functional Partners:
fastkd2
FAST kinase domains 2.
   
 
 0.790
ENSMZEP00005000235
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
    
 
 0.728
mrpl20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
    
 
 0.716
ddx28
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
    
 
 0.700
polrmt
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
      
 0.669
LOC101481499
Mitochondrial transcription termination factor 4.
      
 0.661
pink1
PTEN induced kinase 1.
     
 0.652
tfb2m
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
  
 0.649
mrrf
Mitochondrial ribosome recycling factor.
    
 
 0.611
mrpl19
Mitochondrial ribosomal protein L19.
   
 
 0.605
Your Current Organism:
Maylandia zebra
NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna
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