STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankib1RBR-type E3 ubiquitin transferase. (1117 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.570
rnf216
Ring finger protein 216.
    
 0.565
rps27a
Ribosomal protein S27a.
    
 0.546
birc6
Baculoviral IAP repeat containing 6.
    
 0.510
Cwf19l2
Uncharacterized protein.
      
 0.501
LOC101483147
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.499
ube2l3
Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.499
ENSMZEP00005020735
Ubiquitin-like domain-containing protein.
    
  0.475
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.475
sae1
SUMO1 activating enzyme subunit 1.
     
 0.449
Your Current Organism:
Maylandia zebra
NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.