STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101464872Protein kinase domain-containing protein. (581 aa)    
Predicted Functional Partners:
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.631
LOC101479631
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.631
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
   0.568
ENSMZEP00005036610
Uncharacterized protein.
    
   0.568
LOC101482700
Serine and arginine rich splicing factor 5b.
    
 
 0.534
LOC101477203
Serine and arginine rich splicing factor 6b.
    
 
 0.534
srsf5
Serine and arginine rich splicing factor 5a.
    
 
 0.534
SRSF6
Serine and arginine rich splicing factor 6.
    
 
 0.534
ENSMZEP00005033571
RRM domain-containing protein.
    
 
 0.534
LOC101468456
Uncharacterized protein.
    
 
 0.534
Your Current Organism:
Maylandia zebra
NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna
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