STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112429996Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (381 aa)    
Predicted Functional Partners:
alyref
Aly/REF export factor.
   
 0.984
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.983
LOC101474012
Mago homolog, exon junction complex subunit.
   
 0.982
casc3
Casc3 exon junction complex subunit.
    
 0.981
cwc22
CWC22 spliceosome associated protein homolog.
    
 0.980
LOC101470621
RAN binding protein 2.
  
 0.971
LOC101469959
RRM domain-containing protein.
   
 0.958
LOC101472848
RRM domain-containing protein.
   
 0.956
rnps1
RNA binding protein S1, serine-rich domain.
   
 0.956
ngdn
Neuroguidin, EIF4E binding protein.
   
 0.953
Your Current Organism:
Maylandia zebra
NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna
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