STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101464206Rab-GAP TBC domain-containing protein. (589 aa)    
Predicted Functional Partners:
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
   
 0.650
LOC101472885
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
 0.650
ENSMZEP00005001708
Uncharacterized protein.
   
  0.646
LOC101469766
Uncharacterized protein.
    
 0.575
RAB19
RAB19, member RAS oncogene family.
    
 0.575
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
     
 0.445
LOC101476881
RAB5A, member RAS oncogene family, a.
    
 0.443
RAB17
Uncharacterized protein.
    
 0.443
LOC101481330
RAB5A, member RAS oncogene family, b.
    
 0.443
LOC101465912
Uncharacterized protein.
    
 0.443
Your Current Organism:
Maylandia zebra
NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.