Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APK84_gp04 | LOC101470621 | ENSMZEP00005000011 | ENSMZEP00005014563 | NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. | RAN binding protein 2. | 0.433 |
APK84_gp04 | herc1 | ENSMZEP00005000011 | ENSMZEP00005022724 | NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. | HECT and RLD domain containing E3 ubiquitin protein ligase family member 1. | 0.558 |
ENSMZEP00005001708 | herc1 | ENSMZEP00005001708 | ENSMZEP00005022724 | Uncharacterized protein. | HECT and RLD domain containing E3 ubiquitin protein ligase family member 1. | 0.465 |
ENSMZEP00005001708 | rabgef1 | ENSMZEP00005001708 | ENSMZEP00005013006 | Uncharacterized protein. | RAB guanine nucleotide exchange factor (GEF) 1. | 0.605 |
ENSMZEP00005001708 | rps27a | ENSMZEP00005001708 | ENSMZEP00005005788 | Uncharacterized protein. | Ribosomal protein S27a. | 0.948 |
ENSMZEP00005001708 | zfand4 | ENSMZEP00005001708 | ENSMZEP00005037179 | Uncharacterized protein. | Zinc finger, AN1-type domain 4. | 0.854 |
LOC101470621 | APK84_gp04 | ENSMZEP00005014563 | ENSMZEP00005000011 | RAN binding protein 2. | NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. | 0.433 |
LOC101470621 | herc1 | ENSMZEP00005014563 | ENSMZEP00005022724 | RAN binding protein 2. | HECT and RLD domain containing E3 ubiquitin protein ligase family member 1. | 0.620 |
brca1 | herc1 | ENSMZEP00005028411 | ENSMZEP00005022724 | Uncharacterized protein. | HECT and RLD domain containing E3 ubiquitin protein ligase family member 1. | 0.492 |
brca1 | pias4 | ENSMZEP00005028411 | ENSMZEP00005008862 | Uncharacterized protein. | Protein inhibitor of activated STAT, 4a. | 0.735 |
brca1 | rnf8 | ENSMZEP00005028411 | ENSMZEP00005001645 | Uncharacterized protein. | E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] | 0.800 |
brca1 | rps27a | ENSMZEP00005028411 | ENSMZEP00005005788 | Uncharacterized protein. | Ribosomal protein S27a. | 0.764 |
herc1 | APK84_gp04 | ENSMZEP00005022724 | ENSMZEP00005000011 | HECT and RLD domain containing E3 ubiquitin protein ligase family member 1. | NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. | 0.558 |
herc1 | ENSMZEP00005001708 | ENSMZEP00005022724 | ENSMZEP00005001708 | HECT and RLD domain containing E3 ubiquitin protein ligase family member 1. | Uncharacterized protein. | 0.465 |
herc1 | LOC101470621 | ENSMZEP00005022724 | ENSMZEP00005014563 | HECT and RLD domain containing E3 ubiquitin protein ligase family member 1. | RAN binding protein 2. | 0.620 |
herc1 | brca1 | ENSMZEP00005022724 | ENSMZEP00005028411 | HECT and RLD domain containing E3 ubiquitin protein ligase family member 1. | Uncharacterized protein. | 0.492 |
herc1 | neurl4 | ENSMZEP00005022724 | ENSMZEP00005028766 | HECT and RLD domain containing E3 ubiquitin protein ligase family member 1. | Neuralized E3 ubiquitin protein ligase 4. | 0.484 |
herc1 | pias4 | ENSMZEP00005022724 | ENSMZEP00005008862 | HECT and RLD domain containing E3 ubiquitin protein ligase family member 1. | Protein inhibitor of activated STAT, 4a. | 0.516 |
herc1 | rabgef1 | ENSMZEP00005022724 | ENSMZEP00005013006 | HECT and RLD domain containing E3 ubiquitin protein ligase family member 1. | RAB guanine nucleotide exchange factor (GEF) 1. | 0.465 |
herc1 | rnf8 | ENSMZEP00005022724 | ENSMZEP00005001645 | HECT and RLD domain containing E3 ubiquitin protein ligase family member 1. | E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] | 0.653 |
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