STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101481666Uncharacterized protein; Belongs to the AAA ATPase family. (435 aa)    
Predicted Functional Partners:
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.995
LOC101483318
Uncharacterized protein.
   
 0.972
chmp1a
Charged multivesicular body protein 1A.
   
 0.972
LOC101476317
Chromatin modifying protein 1B.
   
 0.972
LOC101485255
Charged multivesicular body protein 5b.
   
 0.965
LOC112429947
Charged multivesicular body protein 5a.
   
 0.965
chmp2a
Charged multivesicular body protein 2A.
    
 0.950
LOC101470270
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
  
  
 
0.938
ist1
IST1 factor associated with ESCRT-III.
   
 0.937
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
  
  
 
0.900
Your Current Organism:
Maylandia zebra
NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.