STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dclre1aDNA cross-link repair 1A (PSO2 homolog, S. cerevisiae). (931 aa)    
Predicted Functional Partners:
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.894
sympk
Symplekin.
   
 0.879
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
   
 0.871
fancm
Uncharacterized protein.
   
 0.862
ints4
Integrator complex subunit 4.
   
 0.841
LOC101477324
FIP1 like 1b (S. cerevisiae).
    
 0.840
Pcf11
CID domain-containing protein.
   
 0.833
mus81
MUS81 structure-specific endonuclease subunit.
   
 0.829
fancd2
FA complementation group D2.
   
 0.824
cstf1
Cleavage stimulation factor, 3' pre-RNA, subunit 1.
   
 0.822
Your Current Organism:
Maylandia zebra
NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.