STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101470196CCHC-type zinc finger, nucleic acid binding protein a. (166 aa)    
Predicted Functional Partners:
LOC101472815
Heterogeneous nuclear ribonucleoprotein K, like.
   
  
 0.634
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
  
 0.634
ENSMZEP00005035037
Uncharacterized protein.
   
  
 0.634
mrm2
Mitochondrial rRNA methyltransferase 2.
   
 
 0.520
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.509
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.456
RPL27A
Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.443
LOC101476003
SERPINE1 mRNA binding protein 1b.
   
 
 0.439
serbp1
SERPINE1 mRNA binding protein 1a.
   
 
 0.439
psme3
Proteasome activator subunit 3.
   
  
 0.432
Your Current Organism:
Maylandia zebra
NCBI taxonomy Id: 106582
Other names: M. zebra, Metriaclima zebra, Pseudotropheus zebra, zebra mbuna
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.