STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TVD_09465Carboxysome shell protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (83 aa)    
Predicted Functional Partners:
TVD_09455
Carbon dioxide-concentrating protein CcmK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.929
TVD_09450
Carbon dioxide-concentrating protein CcmK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.916
TVD_09475
Carboxysome shell protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.908
TVD_03775
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.898
TVD_09445
Carbon dioxide-concentrating protein CcmK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.894
TVD_09460
Carboxysome shell protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.858
TVD_09470
Carboxysome shell protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.808
TVD_09440
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
 
     0.661
TVD_04520
Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.615
TVD_09480
Ribulose 1,5-bisphosphate carboxylase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.615
Your Current Organism:
Thioalkalivibrio versutus
NCBI taxonomy Id: 106634
Other names: CBS 100464, DSM 13738, T. versutus, Thialkalivibrio versutus, Thioalkalivibrio versutus Sorokin et al. 2001, strain AL 2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.