STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000753985_01304Unannotated protein. (188 aa)    
Predicted Functional Partners:
GCA_000753985_01918
Unannotated protein.
  
  
  0.959
ahcY
Unannotated protein; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
    
 0.911
GCA_000753985_01305
Unannotated protein.
       0.576
ribF
Unannotated protein; Belongs to the ribF family.
     
 0.554
nadE
Unannotated protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
 
 0.486
ileS
Unannotated protein; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.
     
 0.481
lspA
Unannotated protein; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.463
GCA_000753985_03239
Unannotated protein.
       0.445
EYB59_07315
Unannotated protein.
  
    0.435
metG
Unannotated protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.428
Your Current Organism:
Acinetobacter bereziniae
NCBI taxonomy Id: 106648
Other names: A. bereziniae, ATCC 17924, Acinetobacter bereziniae Nemec et al. 2010, Acinetobacter genomic species 10, Acinetobacter genomosp. 10, Acinetobacter genomospecies 10, Acinetobacter genospecies 10, Acinetobacter sp. TDB-2008a, CIP 70.12, DSM 25435, NIPH 521, strain 69
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.