Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EYB59_19110 | GCA_000753985_01384 | GCA_000753985_01386 | GCA_000753985_01384 | Unannotated protein. | Unannotated protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family. | 0.880 |
EYB59_19110 | ligA | GCA_000753985_01386 | GCA_000753985_01383 | Unannotated protein. | Unannotated protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.764 |
EYB59_19110 | smc | GCA_000753985_01386 | GCA_000753985_01385 | Unannotated protein. | Unannotated protein; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.867 |
GCA_000753985_00248 | GCA_000753985_04466 | GCA_000753985_00248 | GCA_000753985_04466 | Unannotated protein. | Unannotated protein. | 0.698 |
GCA_000753985_00248 | leuS | GCA_000753985_00248 | GCA_000753985_01653 | Unannotated protein. | Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.957 |
GCA_000753985_00248 | ligA | GCA_000753985_00248 | GCA_000753985_01383 | Unannotated protein. | Unannotated protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.622 |
GCA_000753985_00248 | polA | GCA_000753985_00248 | GCA_000753985_04054 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.881 |
GCA_000753985_00248 | ruvB | GCA_000753985_00248 | GCA_000753985_00727 | Unannotated protein. | Unannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.486 |
GCA_000753985_00248 | smc | GCA_000753985_00248 | GCA_000753985_01385 | Unannotated protein. | Unannotated protein; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.402 |
GCA_000753985_00248 | topA | GCA_000753985_00248 | GCA_000753985_03620 | Unannotated protein. | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.551 |
GCA_000753985_01384 | EYB59_19110 | GCA_000753985_01384 | GCA_000753985_01386 | Unannotated protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family. | Unannotated protein. | 0.880 |
GCA_000753985_01384 | ligA | GCA_000753985_01384 | GCA_000753985_01383 | Unannotated protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family. | Unannotated protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.795 |
GCA_000753985_01384 | smc | GCA_000753985_01384 | GCA_000753985_01385 | Unannotated protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family. | Unannotated protein; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.884 |
GCA_000753985_01384 | topA | GCA_000753985_01384 | GCA_000753985_03620 | Unannotated protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family. | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.660 |
GCA_000753985_02356 | GCA_000753985_04466 | GCA_000753985_02356 | GCA_000753985_04466 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein. | 0.401 |
GCA_000753985_02356 | ligA | GCA_000753985_02356 | GCA_000753985_01383 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.643 |
GCA_000753985_04466 | GCA_000753985_00248 | GCA_000753985_04466 | GCA_000753985_00248 | Unannotated protein. | Unannotated protein. | 0.698 |
GCA_000753985_04466 | GCA_000753985_02356 | GCA_000753985_04466 | GCA_000753985_02356 | Unannotated protein. | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.401 |
GCA_000753985_04466 | leuS | GCA_000753985_04466 | GCA_000753985_01653 | Unannotated protein. | Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.451 |
GCA_000753985_04466 | ligA | GCA_000753985_04466 | GCA_000753985_01383 | Unannotated protein. | Unannotated protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.697 |
page 1 of 4