STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uraHUnannotated protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. (106 aa)    
Predicted Functional Partners:
GCA_000753985_01843
Unannotated protein.
 
 
 0.997
GCA_000753985_04527
Unannotated protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
  
  
 
0.913
GCA_000753985_01844
Unannotated protein.
 
    0.867
guaD
Unannotated protein; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
   
 0.779
alc
Unannotated protein; Belongs to the allantoicase family.
 
  
 0.696
GCA_000753985_00545
Unannotated protein.
 
  
 0.635
GCA_000753985_01841
Unannotated protein.
       0.613
NDM229_016850
Unannotated protein.
 
  
 0.555
GCA_000753985_01840
Unannotated protein.
 
    0.510
GCA_000753985_01838
Unannotated protein.
 
    0.422
Your Current Organism:
Acinetobacter bereziniae
NCBI taxonomy Id: 106648
Other names: A. bereziniae, ATCC 17924, Acinetobacter bereziniae Nemec et al. 2010, Acinetobacter genomic species 10, Acinetobacter genomosp. 10, Acinetobacter genomospecies 10, Acinetobacter genospecies 10, Acinetobacter sp. TDB-2008a, CIP 70.12, DSM 25435, NIPH 521, strain 69
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.