Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EYB59_02640 | EYB59_20210 | GCA_000753985_03286 | GCA_000753985_02167 | Unannotated protein. | Unannotated protein. | 0.917 |
EYB59_02640 | GCA_000753985_01827 | GCA_000753985_03286 | GCA_000753985_01827 | Unannotated protein. | Unannotated protein. | 0.928 |
EYB59_02640 | GCA_000753985_02168 | GCA_000753985_03286 | GCA_000753985_02168 | Unannotated protein. | Unannotated protein. | 0.920 |
EYB59_02640 | GCA_000753985_02816 | GCA_000753985_03286 | GCA_000753985_02816 | Unannotated protein. | Unannotated protein; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.936 |
EYB59_02640 | NDM229_012610 | GCA_000753985_03286 | GCA_000753985_02935 | Unannotated protein. | Unannotated protein. | 0.928 |
EYB59_02640 | acsA | GCA_000753985_03286 | GCA_000753985_02024 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.928 |
EYB59_02640 | glcB | GCA_000753985_03286 | GCA_000753985_00563 | Unannotated protein. | Unannotated protein; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | 0.916 |
EYB59_02640 | odhB | GCA_000753985_03286 | GCA_000753985_02170 | Unannotated protein. | Unannotated protein; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). | 0.914 |
EYB59_02640 | sucC | GCA_000753985_03286 | GCA_000753985_02172 | Unannotated protein. | Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.934 |
EYB59_02640 | sucD | GCA_000753985_03286 | GCA_000753985_02173 | Unannotated protein. | Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.929 |
EYB59_20210 | EYB59_02640 | GCA_000753985_02167 | GCA_000753985_03286 | Unannotated protein. | Unannotated protein. | 0.917 |
EYB59_20210 | GCA_000753985_02168 | GCA_000753985_02167 | GCA_000753985_02168 | Unannotated protein. | Unannotated protein. | 0.999 |
EYB59_20210 | GCA_000753985_02816 | GCA_000753985_02167 | GCA_000753985_02816 | Unannotated protein. | Unannotated protein; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.487 |
EYB59_20210 | acsA | GCA_000753985_02167 | GCA_000753985_02024 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.463 |
EYB59_20210 | odhB | GCA_000753985_02167 | GCA_000753985_02170 | Unannotated protein. | Unannotated protein; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). | 0.575 |
EYB59_20210 | sucC | GCA_000753985_02167 | GCA_000753985_02172 | Unannotated protein. | Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.987 |
EYB59_20210 | sucD | GCA_000753985_02167 | GCA_000753985_02173 | Unannotated protein. | Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.988 |
GCA_000753985_01827 | EYB59_02640 | GCA_000753985_01827 | GCA_000753985_03286 | Unannotated protein. | Unannotated protein. | 0.928 |
GCA_000753985_01827 | GCA_000753985_02816 | GCA_000753985_01827 | GCA_000753985_02816 | Unannotated protein. | Unannotated protein; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.940 |
GCA_000753985_01827 | NDM229_012610 | GCA_000753985_01827 | GCA_000753985_02935 | Unannotated protein. | Unannotated protein. | 0.903 |
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