STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCABP00000000048annotation not available (570 aa)    
Predicted Functional Partners:
EIF4A3
Eukaryotic translation initiation factor 4A3.
   
  0.932
PNN
Pinin, desmosome associated protein.
    
  0.895
RBM8A
RNA binding motif protein 8A.
    
  0.882
ENSCABP00000010329
annotation not available
    
  0.876
MAGOH
Mago homolog, exon junction complex subunit.
    
  0.876
CASC3
CASC3 exon junction complex subunit.
    
  0.873
ENSCABP00000023288
annotation not available
    
  0.865
TDRD3
Tudor domain containing 3.
    
  0.865
UPF1
UPF1 RNA helicase and ATPase.
    
  0.859
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
  0.859
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.