STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAT1FAT atypical cadherin 1. (4583 aa)    
Predicted Functional Partners:
FJX1
Four-jointed box kinase 1.
   
 0.930
FRMD6
FERM domain containing 6.
    
 0.857
LIX1L
Limb and CNS expressed 1 like.
   
 0.807
LIX1
Limb and CNS expressed 1.
   
 0.807
ATN1
Atrophin 1.
    
 0.800
RERE
Arginine-glutamic acid dipeptide repeats.
    
 0.800
CSNK1D
Casein kinase 1 delta.
    
 0.776
ENSCABP00000023782
annotation not available
    
 0.776
CTNNB1
Catenin beta 1.
    
 0.655
NPHS2
NPHS2 stomatin family member, podocin.
    
 
 0.652
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.