STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP12Ubiquitin specific peptidase 12. (366 aa)    
Predicted Functional Partners:
WDR48
WD repeat domain 48.
    
 0.970
WDR20
WD repeat domain 20.
    
 0.935
DMWD
DM1 locus, WD repeat containing.
    
 0.935
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.851
FANCD2
FA complementation group D2.
    
 0.807
ENSCABP00000006846
annotation not available
    
  0.792
ENSCABP00000018096
annotation not available
    
  0.792
ENSCABP00000029478
annotation not available
    
 0.770
PCNA
Proliferating cell nuclear antigen.
   
  0.749
FANCI
FA complementation group I.
    
 0.748
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.