STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS52VPS52 subunit of GARP complex. (698 aa)    
Predicted Functional Partners:
VPS54
VPS54 subunit of GARP complex.
    
 0.999
VPS51
VPS51 subunit of GARP complex.
   
 0.996
VPS53
VPS53 subunit of GARP complex.
   
 0.996
VPS50
VPS50 subunit of EARP/GARPII complex.
   
 0.993
EIPR1
EARP complex and GARP complex interacting protein 1.
    
 0.973
DHH
Desert hedgehog signaling molecule.
    
 0.941
SHH
Sonic hedgehog signaling molecule.
    
 0.941
IHH
Indian hedgehog signaling molecule.
    
 0.941
ENSCABP00000017374
annotation not available
   
 0.876
ENSCABP00000017425
annotation not available
    
 0.876
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.