STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM162AFamily with sequence similarity 162 member A. (195 aa)    
Predicted Functional Partners:
DTX3L
Deltex E3 ubiquitin ligase 3L.
   
 
 0.859
HDAC11
Histone deacetylase 11.
    
 0.534
IFIH1
Interferon induced with helicase C domain 1.
   
 
 0.533
EPSTI1
Epithelial stromal interaction 1.
   
  
 0.517
PARP3
poly(ADP-ribose) polymerase family member 3.
    
 
 0.495
HDAC2
Histone deacetylase 2.
    
  0.477
ENSCABP00000018588
annotation not available
    
  0.477
HDAC1
Histone deacetylase 1.
    
  0.477
HDAC3
Histone deacetylase 3.
    
  0.477
PARP4
poly(ADP-ribose) polymerase family member 4.
    
 
 0.472
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.