STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHFPL4LHFPL tetraspan subfamily member 4. (238 aa)    
Predicted Functional Partners:
PCDH15
Protocadherin related 15.
    
 0.827
CIB2
Calcium and integrin binding family member 2.
     
 0.667
TMC3
Transmembrane channel like 3.
   
 
 0.570
TMC1
Transmembrane channel like 1.
   
 
 0.570
CIB3
Calcium and integrin binding family member 3.
     
 0.555
ENSCABP00000024872
annotation not available
   
 0.462
CDH23
Cadherin related 23.
   
 0.462
CDH11
Cadherin 11.
   
 0.445
CDH8
Cadherin 8.
   
 0.445
CDH7
Cadherin 7.
   
 0.445
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.