STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PELOPelota mRNA surveillance and ribosome rescue factor. (385 aa)    
Predicted Functional Partners:
HBS1L
HBS1 like translational GTPase.
   
 0.999
FAU
FAU ubiquitin like and ribosomal protein S30 fusion.
    
 
 0.995
RACK1
Receptor for activated C kinase 1.
    
 
 0.971
ABCE1
ATP binding cassette subfamily E member 1.
  
 
 0.959
RPS20
Ribosomal protein S20.
    
 
 0.957
RPS6
Ribosomal protein S6.
   
 
 0.956
RPS17
Ribosomal protein S17.
   
 
 0.955
RPS12
Ribosomal protein S12.
    
 
 0.951
ENSCABP00000006385
annotation not available
    
 
 0.947
RPL38
Ribosomal protein L38.
    
 
 0.945
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.