STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB1ARAB1A, member RAS oncogene family. (202 aa)    
Predicted Functional Partners:
TRAPPC4
Trafficking protein particle complex 4.
    
 0.961
TRAPPC5
Trafficking protein particle complex 5.
    
 0.959
TRAPPC8
Trafficking protein particle complex 8.
    
 0.958
TRAPPC2B
Trafficking protein particle complex 2B.
    
 0.954
GDI1
GDP dissociation inhibitor 1.
   
 0.951
GDI2
GDP dissociation inhibitor 2.
   
 0.951
TRAPPC3L
Trafficking protein particle complex 3 like.
   
 0.946
TRAPPC3
Trafficking protein particle complex 3.
   
 0.946
USO1
USO1 vesicle transport factor.
   
 0.927
TBC1D20
TBC1 domain family member 20.
    
 0.922
Your Current Organism:
Chelonoidis abingdonii
NCBI taxonomy Id: 106734
Other names: Abingdon island giant tortoise, C. abingdonii, Chelonoidis nigra abingdonii, Geochelone nigra abigdonii, Geochelone nigra abingdoni, Geochelone nigra ephippium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.